# Adapted from https://github.com/mlcommons/training_results_v1.1/blob/main/NVIDIA/benchmarks/bert/implementations/pytorch/padding.py import torch import torch.nn.functional as F from einops import rearrange def unpad_input(hidden_states, attention_mask, unused_mask=None): """ Arguments: hidden_states: (batch, seqlen, ...) attention_mask: (batch, seqlen), bool / int, 1 means valid and 0 means not valid. unused_mask: (batch, seqlen), bool / int, 1 means the element is allocated but unused. Return: hidden_states: (total_nnz, ...), where total_nnz = number of tokens selected in attention_mask + unused_mask. indices: (total_nnz), the indices of masked tokens from the flattened input sequence. cu_seqlens: (batch + 1), the cumulative sequence lengths, used to index into hidden_states. max_seqlen_in_batch: int seqused: (batch), returns the number of tokens selected in attention_mask + unused_mask. """ all_masks = (attention_mask + unused_mask) if unused_mask is not None else attention_mask seqlens_in_batch = all_masks.sum(dim=-1, dtype=torch.int32) used_seqlens_in_batch = attention_mask.sum(dim=-1, dtype=torch.int32) indices = torch.nonzero(all_masks.flatten(), as_tuple=False).flatten() max_seqlen_in_batch = seqlens_in_batch.max().item() cu_seqlens = F.pad(torch.cumsum(seqlens_in_batch, dim=0, dtype=torch.int32), (1, 0)) # TD [2022-03-04] We don't want to index with a bool mask, because Pytorch will expand the # bool mask, then call nonzero to get the indices, then index with those. The indices is @dim # times larger than it needs to be, wasting memory. It's faster and more memory-efficient to # index with integer indices. return ( rearrange(hidden_states, "b s ... -> (b s) ...")[indices], indices, cu_seqlens, max_seqlen_in_batch, used_seqlens_in_batch, ) def pad_input(hidden_states, indices, batch, seqlen): """ Arguments: hidden_states: (total_nnz, ...), where total_nnz = number of tokens in selected in attention_mask. indices: (total_nnz), the indices that represent the non-masked tokens of the original padded input sequence. batch: int, batch size for the padded sequence. seqlen: int, maximum sequence length for the padded sequence. Return: hidden_states: (batch, seqlen, ...) """ dim = hidden_states.shape[1:] output = torch.zeros((batch * seqlen), *dim, device=hidden_states.device, dtype=hidden_states.dtype) output[indices] = hidden_states return rearrange(output, "(b s) ... -> b s ...", b=batch)